I installed the Logic Apps mapper/schema editor SDK on a BizTalk 2016 VM.

After I loaded a BizTalk project to make some changes, I discovered that the BizTalk Project Template was overwritten.

btsproject

I thought this was a  bug and reported it.

I found out that having both on the same machine is currently unsupported  😮

To fix the issue, I uninstalled BizTalk on the machine I was using for Logic App development. 

On the BizTalk machine, I uninstalled both the Logic App designer and the Design Tools.